Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS41295.1Hypothetical protein. (362 aa)    
Predicted Functional Partners:
AMS41294.1
Hypothetical protein.
 
     0.891
AMS41293.1
ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
 
     0.861
AMS41292.1
Hypothetical protein.
 
     0.814
AMS41430.1
Tetratricopeptide repeat protein.
  
     0.721
AMS41429.1
Hypothetical protein.
  
     0.703
AMS39476.1
Hypothetical protein.
  
     0.674
AMS41263.1
Hypothetical protein.
  
     0.663
AMS44071.1
Pfam:pfam06078 Bacterial protein of unknown function (DUF937).
  
     0.622
tdk
Pfam:pfam00265 Thymidine kinase.
       0.544
AMS38990.1
Hydantoinase; Pfam:pfam01968 Hydantoinase/oxoprolinase.
  
     0.504
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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