Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS41302.1Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain. (317 aa)    
Predicted Functional Partners:
AMS43247.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.704
AMS43204.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.619
AMS43002.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
 
 
 0.514
AMS39821.1
Adhesin; Pfam:pfam03797 Autotransporter beta-domain.
  
     0.506
AMS43019.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.483
AMS39564.1
Putative AraC family transcriptional regulator; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.480
AMS41303.1
RNA signal recognition particle 4.5S RNA; Pfam:pfam07237 Protein of unknown function (DUF1428).
       0.468
AMS43010.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.452
AMS41300.1
Hypothetical protein.
       0.431
AMS41301.1
Hypothetical protein.
       0.431
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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