Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS41303.1RNA signal recognition particle 4.5S RNA; Pfam:pfam07237 Protein of unknown function (DUF1428). (117 aa)    
Predicted Functional Partners:
AMS41768.1
Pfam:pfam13502 AsmA-like C-terminal region.
   
    0.538
AMS44078.1
Hypothetical protein; Pfam:pfam13502 AsmA-like C-terminal region.
   
    0.538
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.501
AMS42713.1
Hypothetical protein; Pfam:pfam07311 Dodecin.
   
    0.497
AMS41302.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
       0.468
AMS40377.1
Hypothetical protein.
  
     0.453
AMS42391.1
Pfam:pfam04828 Glutathione-dependent formaldehyde-activating enzyme.
 
    0.422
AMS42839.1
Pfam:pfam11450 Protein of unknwon function (DUF3008).
   
    0.412
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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