Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS41381.1Aspartate racemase; Pfam:pfam01177 Asp/Glu/Hydantoin racemase. (232 aa)    
Predicted Functional Partners:
AMS41095.1
Pfam:pfam01266 FAD dependent oxidoreductase.
   
 
  0.908
AMS41622.1
Hypothetical protein; Pfam:pfam01266 FAD dependent oxidoreductase.
   
 
  0.908
AMS41786.1
Phosphoserine phosphatase; Pfam:pfam00702 haloacid dehalogenase-like hydrolase.
    
 0.906
AMS40228.1
Putative D-amino acid aminotransferase; Pfam:pfam01063 Aminotransferase class IV.
    
 0.905
AMS42692.1
D-amino acid aminotransferase; Pfam:pfam01063 Aminotransferase class IV.
    
 0.905
AMS39506.1
Cystathionine beta-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
     
 0.902
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.902
AMS41723.1
Cystathionine gamma-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
     
 0.902
AMS43155.1
Cystathionine beta-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
     
 0.902
AMS43390.1
Pfam:pfam00155 Aminotransferase class I and II.
    
  0.902
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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