Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS41419.1Choline dehydrogenase; Pfam:pfam00732 GMC oxidoreductase. (538 aa)    
Predicted Functional Partners:
AMS41417.1
3-hydroxyisobutyrate dehydrogenase; Pfam:pfam03446 NAD binding domain of 6-phosphogluconate dehydrogenase.
  
    0.564
AMS41418.1
Isomerase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     
 0.555
AMS41420.1
acyl-CoA hydrolase; Pfam:pfam03061 Thioesterase superfamily.
       0.506
AMS43288.1
Cysteine desulfurase; Pfam:pfam12796 Ankyrin repeats (3 copies).
  
 0.489
AMS40143.1
Hypothetical protein.
    
  0.433
AMS40843.1
Hypothetical protein.
    
  0.433
AMS40221.1
Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies).
    
 0.428
AMS41802.1
Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies).
    
 0.428
AMS39956.1
Hypothetical protein; Pfam:pfam03567 Sulfotransferase family.
    
 0.402
AMS40399.1
TPR repeat-containing protein; Pfam:pfam13414 TPR repeat.
    
 0.402
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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