Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS41425.1Pfam:pfam06904 Extensin-like protein C-terminus. (333 aa)    
Predicted Functional Partners:
AMS41426.1
Pfam:pfam06904 Extensin-like protein C-terminus.
 
    
0.688
AMS42037.1
Pfam:pfam13650 Aspartyl protease.
  
     0.531
AMS41424.1
Hypothetical protein; Pfam:pfam14067 LssY C-terminus.
       0.524
AMS41423.1
DNA-binding protein; Pfam:pfam01595 Domain of unknown function DUF21.
       0.491
AMS40990.1
Pfam:pfam06226 Protein of unknown function (DUF1007).
  
     0.462
AMS41818.1
Endonuclease.
 
     0.427
AMS41427.1
Pfam:pfam12616 Protein of unknown function (DUF3775).
       0.415
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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