STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AMS41447.1Polyketide cyclase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein. (155 aa)    
Predicted Functional Partners:
AMS41446.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
    0.995
AMS43909.1
Hypothetical protein.
 
    0.782
AMS41448.1
Pfam:pfam04828 Glutathione-dependent formaldehyde-activating enzyme.
       0.685
AMS40375.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
 
    0.632
AMS39821.1
Adhesin; Pfam:pfam03797 Autotransporter beta-domain.
  
     0.422
AMS41445.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
       0.408
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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