Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS41465.1Hypothetical protein; Pfam:pfam00563 EAL domain. (303 aa)    
Predicted Functional Partners:
AMS44355.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
  
 0.892
AMS44205.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
 
 0.857
AMS39305.1
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
 
 0.850
AMS40372.1
Diguanylate cyclase (GGDEF) domain-containing protein; Pfam:pfam00990 GGDEF domain.
 
  
 0.834
AMS39660.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
  
 0.831
AMS42072.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
  
 0.831
AMS39937.1
Hypothetical protein; Pfam:pfam00990 GGDEF domain.
 
  
 0.830
AMS42333.1
Diguanylate cyclase (GGDEF) domain-containing protein; Pfam:pfam00990 GGDEF domain.
 
  
 0.830
AMS44347.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
  
 0.830
AMS39308.1
Diguanylate cyclase/phosphodiesterase; Pfam:pfam00990 GGDEF domain.
 
  
 0.829
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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