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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41478.1Pfam:pfam00440 Bacterial regulatory proteins, tetR family. (198 aa)    
Predicted Functional Partners:
AMS41476.1
Saccharopine dehydrogenase.
 
     0.848
AMS41477.1
NADP-dependent oxidoreductase; Pfam:pfam00107 Zinc-binding dehydrogenase.
       0.534
AMS41479.1
Hypothetical protein; Pfam:pfam01223 DNA/RNA non-specific endonuclease.
       0.528
AMS43761.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.495
AMS42061.1
Hypothetical protein; Pfam:pfam14399 NlpC/p60-like transpeptidase.
  
     0.418
AMS40743.1
Pfam:pfam01636 Phosphotransferase enzyme family.
  
   
 0.405
AMS43139.1
NIPSNAP family containing protein; Pfam:pfam07978 NIPSNAP.
 
     0.404
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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