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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41479.1Hypothetical protein; Pfam:pfam01223 DNA/RNA non-specific endonuclease. (797 aa)    
Predicted Functional Partners:
AMS43090.1
Hydrolase; Pfam:pfam12706 Beta-lactamase superfamily domain.
   
   0.785
AMS43911.1
Hypothetical protein; Pfam:pfam12706 Beta-lactamase superfamily domain.
   
   0.785
AMS41856.1
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.635
AMS44299.1
Pfam:pfam01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit.
   
    0.635
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.602
AMS39360.1
Hypothetical protein.
   
   0.601
AMS41784.1
Serine protease; Pfam:pfam13365 Trypsin-like peptidase domain; Belongs to the peptidase S1C family.
  
 
 0.540
AMS42452.1
Serine protease; Pfam:pfam13365 Trypsin-like peptidase domain; Belongs to the peptidase S1C family.
  
 
 0.540
AMS43593.1
Serine protease; Pfam:pfam13365 Trypsin-like peptidase domain; Belongs to the peptidase S1C family.
  
 
 0.540
AMS41478.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
       0.528
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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