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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41764.1Thioesterase; Pfam:pfam13279 Thioesterase-like superfamily. (159 aa)    
Predicted Functional Partners:
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
   
 0.877
AMS40809.1
NADPH dependend quinone reductase; Pfam:pfam05853 Prokaryotic protein of unknown function (DUF849).
 
  
 0.733
AMS43446.1
ACP S-malonyltransferase; Pfam:pfam00698 Acyl transferase domain.
  
 
 0.549
AMS41765.1
Lactate dehydrogenase; Pfam:pfam02913 FAD linked oxidases, C-terminal domain.
       0.515
AMS41763.1
Hypothetical protein.
       0.478
AMS41338.1
MaoC family dehydratase; Pfam:pfam01575 MaoC like domain.
 
   
 0.469
AMS40188.1
Pfam:pfam05088 Bacterial NAD-glutamate dehydrogenase.
  
    0.420
AMS43099.1
N-methylproline demethylase; Pfam:pfam00724 NADH:flavin oxidoreductase / NADH oxidase family.
 
  
 0.403
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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