STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41895.1Pfam:pfam00155 Aminotransferase class I and II. (393 aa)    
Predicted Functional Partners:
AMS39834.1
Arginase; Pfam:pfam00491 Arginase family; Belongs to the arginase family.
     
 0.901
argH
Pfam:pfam00206 Lyase.
 
  
 0.844
arcA
Arginine deiminase; Pfam:pfam02274 Amidinotransferase.
    
 0.810
AMS41894.1
FAD-dependent oxidoreductase; Pfam:pfam01571 Aminomethyltransferase folate-binding domain; Belongs to the GcvT family.
  
  
 0.784
AMS41897.1
Dimethylglycine dehydrogenase; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the GcvT family.
  
  
 0.784
AMS41896.1
Hypothetical protein; Pfam:pfam00702 haloacid dehalogenase-like hydrolase.
     
 0.781
AMS41898.1
XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
  
  
 0.735
AMS40735.1
Pfam:pfam00696 Amino acid kinase family; Belongs to the aspartokinase family.
 
 0.672
AMS41893.1
Hypothetical protein; Pfam:pfam02633 Creatinine amidohydrolase.
       0.618
AMS42738.1
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
    0.609
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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