Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS41898.1XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain. (196 aa)    
Predicted Functional Partners:
AMS41897.1
Dimethylglycine dehydrogenase; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the GcvT family.
 
  
 0.851
AMS41894.1
FAD-dependent oxidoreductase; Pfam:pfam01571 Aminomethyltransferase folate-binding domain; Belongs to the GcvT family.
 
  
 0.845
AMS43842.1
Transcriptional regulator; Pfam:pfam07883 Cupin domain.
 
 
 0.758
AMS41895.1
Pfam:pfam00155 Aminotransferase class I and II.
  
  
 0.735
AMS41896.1
Hypothetical protein; Pfam:pfam00702 haloacid dehalogenase-like hydrolase.
       0.720
AMS41096.1
Transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
 
 
 0.710
AMS41122.1
Transcriptional regulator, XRE family; Pfam:pfam01381 Helix-turn-helix.
  
  
 0.649
AMS43343.1
XRE family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
  
 0.605
AMS41893.1
Hypothetical protein; Pfam:pfam02633 Creatinine amidohydrolase.
       0.573
AMS41899.1
P-nitrobenzoate reductase NfnB; Pfam:pfam00881 Nitroreductase family.
     
 0.548
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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