STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41960.1Pfam:pfam00487 Fatty acid desaturase. (336 aa)    
Predicted Functional Partners:
AMS41961.1
Pfam:pfam12974 ABC transporter, phosphonate, periplasmic substrate-binding protein.
 
     0.923
AMS41959.1
XRE family transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
 
     0.874
AMS41671.1
Peptide ABC transporter permease.
  
     0.759
AMS41670.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
  
     0.746
AMS41672.1
Hypothetical protein; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
  
     0.735
AMS41669.1
Diguanylate cyclase; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
  
     0.659
AMS43257.1
Hypothetical protein.
  
     0.648
AMS41963.1
Peptidase M24; Pfam:pfam00557 Metallopeptidase family M24.
  
  
  0.621
AMS44287.1
Methyltransferase; Pfam:pfam06253 Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.
  
     0.562
AMS41418.1
Isomerase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.545
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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