STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41999.1Auxin-binding protein; Pfam:pfam13115 YtkA-like. (146 aa)    
Predicted Functional Partners:
AMS42000.1
Methylamine utilization protein; Pfam:pfam03150 Di-heme cytochrome c peroxidase.
     
 0.798
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.500
AMS39047.1
Pfam:pfam00067 Cytochrome P450.
   
 0.487
AMS39563.1
Hypothetical protein; Pfam:pfam00067 Cytochrome P450.
   
 0.487
AMS43466.1
2-acyl-glycerophospho-ethanolamine acyltransferase; Pfam:pfam00501 AMP-binding enzyme.
   
 0.470
AMS41998.1
Succinate-semialdehyde dehdyrogenase; Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
     
 0.423
AMS41485.1
AMP-dependent synthetase and ligase; Pfam:pfam00501 AMP-binding enzyme.
  
 0.412
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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