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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42004.1Pfam:pfam03992 Antibiotic biosynthesis monooxygenase. (104 aa)    
Predicted Functional Partners:
AMS42003.1
Glyoxalase; Pfam:pfam12681 Glyoxalase-like domain.
       0.803
AMS42005.1
Hypothetical protein.
       0.768
AMS42008.1
Pfam:pfam07715 TonB-dependent Receptor Plug Domain.
 
     0.673
AMS42006.1
Hypothetical protein.
       0.618
AMS42007.1
Hypothetical protein.
       0.618
AMS42011.1
Hypothetical protein; Pfam:pfam01497 Periplasmic binding protein.
 
     0.573
hmuV
Iron ABC transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
     0.547
AMS42012.1
Heme ABC transporter permease; Pfam:pfam01032 FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.487
AMS39113.1
Hypothetical protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
    0.443
AMS42009.1
Pfam:pfam10636 Hemin uptake protein hemP.
       0.441
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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