Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS42036.1FmdB family regulatory protein; Pfam:pfam09723 Zinc ribbon domain. (99 aa)    
Predicted Functional Partners:
AMS42035.1
Pfam:pfam02293 AmiS/UreI family transporter.
 
     0.870
AMS42034.1
Formamidase FmdA; Pfam:pfam03069 Acetamidase/Formamidase family.
 
     0.866
AMS42031.1
Sensor protein ZraS; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.782
AMS40510.1
Integrase family protein.
  
    0.521
AMS43358.1
Acetamidase; Pfam:pfam03069 Acetamidase/Formamidase family.
 
     0.519
AMS43344.1
Two component response regulator; Pfam:pfam03861 ANTAR domain.
  
     0.515
AMS43353.1
N-acetylmuramoyl-L-alanine amidase AmiC; Pfam:pfam13433 Periplasmic binding protein domain.
 
     0.420
AMS42818.1
Pfam:pfam13673 Acetyltransferase (GNAT) domain.
  
     0.414
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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