STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42079.1Pfam:pfam03576 Peptidase family S58. (340 aa)    
Predicted Functional Partners:
AMS42080.1
Extracellular ligand-binding receptor; Pfam:pfam13458 Periplasmic binding protein.
       0.845
AMS42078.1
Hypothetical protein; Pfam:pfam10016 Predicted secreted protein (DUF2259).
       0.702
AMS42081.1
4-hydroxyphenylacetate 3-monooxygenase; Pfam:pfam01613 Flavin reductase like domain.
 
     0.631
AMS42082.1
ATPase; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
 
   
 0.583
AMS42083.1
Von Willebrand factor A; Pfam:pfam05762 VWA domain containing CoxE-like protein.
       0.568
AMS42085.1
XdhC/CoxF family protein; Pfam:pfam13478 XdhC Rossmann domain.
       0.540
AMS42084.1
XdhC/CoxI family protein; Pfam:pfam02625 XdhC and CoxI family.
       0.539
AMS42076.1
Pfam:pfam00206 Lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.484
AMS42077.1
Hypothetical protein.
       0.483
AMS42086.1
Hypothetical protein; Pfam:pfam12804 MobA-like NTP transferase domain.
       0.471
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.