Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS42203.1Pfam:pfam00313 'Cold-shock' DNA-binding domain. (198 aa)    
Predicted Functional Partners:
cspA_2
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
   
 0.768
AMS41372.1
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
   
 0.768
AMS41309.1
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
   
 0.759
AMS43147.1
Hypothetical protein; Pfam:pfam10276 Zinc-finger domain.
  
     0.663
AMS42204.1
Hypothetical protein; Pfam:pfam02643 Uncharacterized ACR, COG1430.
  
    0.655
AMS41245.1
Flagellar export protein FliJ.
  
     0.619
AMS42205.1
Pfam:pfam12697 Alpha/beta hydrolase family.
 
     0.615
AMS42326.1
Hypothetical protein.
  
     0.601
AMS43749.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.591
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.536
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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