STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42203.1Pfam:pfam00313 'Cold-shock' DNA-binding domain. (198 aa)    
Predicted Functional Partners:
AMS41309.1
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
     0.756
cspA_2
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
     0.755
AMS41372.1
Pfam:pfam00313 'Cold-shock' DNA-binding domain.
  
     0.755
AMS43147.1
Hypothetical protein; Pfam:pfam10276 Zinc-finger domain.
  
     0.663
AMS41245.1
Flagellar export protein FliJ.
  
     0.619
AMS42205.1
Pfam:pfam12697 Alpha/beta hydrolase family.
 
 
 
 0.617
AMS42326.1
Hypothetical protein.
  
     0.601
AMS43749.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.591
AMS42204.1
Hypothetical protein; Pfam:pfam02643 Uncharacterized ACR, COG1430.
  
    0.561
AMS42202.1
Glyoxalase; Pfam:pfam00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
    0.516
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.