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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42225.1Glycosyl hydrolase family 5; Pfam:pfam09923 Uncharacterized protein conserved in bacteria (DUF2155). (202 aa)    
Predicted Functional Partners:
AMS42224.1
Pfam:pfam05071 NADH ubiquinone oxidoreductase subunit NDUFA12.
 
     0.778
AMS42326.1
Hypothetical protein.
  
     0.651
AMS41248.1
Histidine phosphotransferase; Pfam:pfam10090 Uncharacterized protein conserved in bacteria (DUF2328).
  
     0.649
AMS40673.1
Cell division protein FtsX.
  
     0.625
AMS39975.1
Pfam:pfam07219 HemY protein N-terminus.
  
     0.607
AMS40702.1
Membrane protein; Pfam:pfam02600 Disulfide bond formation protein DsbB.
 
     0.599
AMS42226.1
Hypothetical protein.
       0.572
AMS43806.1
Membrane protein; Pfam:pfam09976 Tetratricopeptide repeat.
  
     0.557
AMS40206.1
Hypothetical protein; Pfam:pfam04390 Lipopolysaccharide-assembly.
  
     0.551
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.532
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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