STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42250.1Pfam:pfam03349 Outer membrane protein transport protein (OMPP1/FadL/TodX). (378 aa)    
Predicted Functional Partners:
AMS43570.1
Pfam:pfam09917 Uncharacterized protein conserved in bacteria (DUF2147).
 
    0.654
AMS44230.1
Pfam:pfam02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
  
 0.580
AMS43776.1
Hypothetical protein; Pfam:pfam01183 Glycosyl hydrolases family 25.
  
     0.552
AMS44098.1
Hypothetical protein.
  
     0.514
AMS42252.1
Exopolysaccharide production negative regulator.
  
    0.512
AMS44126.1
Pfam:pfam00535 Glycosyl transferase family 2.
  
     0.510
AMS43466.1
2-acyl-glycerophospho-ethanolamine acyltransferase; Pfam:pfam00501 AMP-binding enzyme.
  
  
 0.508
AMS44125.1
Hypothetical protein; Pfam:pfam13692 Glycosyl transferases group 1.
  
     0.482
AMS42251.1
Hypothetical protein.
       0.467
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.452
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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