Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS42261.1Pfam:pfam05036 Sporulation related domain. (1081 aa)    
Predicted Functional Partners:
AMS42793.1
Kinesin.
  
     0.770
AMS42870.1
Pfam:pfam13116 Protein of unknown function.
  
     0.767
AMS41768.1
Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.753
AMS44078.1
Hypothetical protein; Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.739
AMS39425.1
Hypothetical protein.
  
    0.725
AMS42744.1
ATP-binding protein; Pfam:pfam08904 Domain of unknown function (DUF1849).
  
     0.709
AMS44357.1
Transporter.
  
     0.708
AMS43471.1
Peptigoglycan-binding protein LysM; Pfam:pfam01476 LysM domain.
  
    0.696
AMS44236.1
Hypothetical protein; Pfam:pfam01471 Putative peptidoglycan binding domain.
 
     0.679
AMS42377.1
Pfam:pfam13505 Outer membrane protein beta-barrel domain.
 
     0.673
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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