Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS42278.1Pfam:pfam04116 Fatty acid hydroxylase superfamily. (316 aa)    
Predicted Functional Partners:
AMS42277.1
Hypothetical protein.
       0.841
AMS42276.1
Pfam:pfam00494 Squalene/phytoene synthase.
  
 
 0.808
AMS42107.1
Pfam:pfam07947 YhhN-like protein.
     0.660
AMS41312.1
RNA-binding protein; Pfam:pfam13709 Domain of unknown function (DUF4159).
   
 
 0.580
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.479
AMS42275.1
Pfam:pfam04430 Protein of unknown function (DUF498/DUF598).
       0.479
AMS39047.1
Pfam:pfam00067 Cytochrome P450.
  
 
 0.447
AMS39479.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
  
    0.435
AMS38957.1
Diguanylate phosphodiesterase; Pfam:pfam00563 EAL domain.
   
    0.422
AMS43733.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
  
    0.422
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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