STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42278.1Pfam:pfam04116 Fatty acid hydroxylase superfamily. (316 aa)    
Predicted Functional Partners:
AMS42276.1
Pfam:pfam00494 Squalene/phytoene synthase.
  
 
 0.825
AMS42277.1
Hypothetical protein.
       0.804
AMS42107.1
Pfam:pfam07947 YhhN-like protein.
     0.660
AMS41312.1
RNA-binding protein; Pfam:pfam13709 Domain of unknown function (DUF4159).
   
 
 0.630
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.493
AMS39047.1
Pfam:pfam00067 Cytochrome P450.
  
 
 0.486
AMS42275.1
Pfam:pfam04430 Protein of unknown function (DUF498/DUF598).
       0.485
AMS39289.1
Hypothetical protein; Pfam:pfam01494 FAD binding domain.
   
 
 0.428
AMS39952.1
2-octaprenyl-6-methoxyphenyl hydroxylase; Pfam:pfam01494 FAD binding domain.
   
 
 0.428
AMS41809.1
Glutamate synthase; Pfam:pfam01494 FAD binding domain.
   
 
 0.428
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.