STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS42301.1Dihydroxyacetone kinase; Pfam:pfam02733 Dak1 domain. (539 aa)    
Predicted Functional Partners:
AMS42298.1
Hypothetical protein.
 
     0.946
AMS42297.1
Sugar ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   
 0.942
AMS42296.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   
 0.923
AMS42299.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
   
 0.895
AMS42300.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
   
 0.887
AMS42295.1
ABC transporter substrate-binding protein; Pfam:pfam01547 Bacterial extracellular solute-binding protein.
 
   
 0.872
AMS42294.1
Transcriptional regulator LacI family; Pfam:pfam13407 Periplasmic binding protein domain.
 
    0.775
AMS40015.1
ATPase AAA; Pfam:pfam00158 Sigma-54 interaction domain.
   
 
 0.731
AMS40017.1
Pfam:pfam02954 Bacterial regulatory protein, Fis family.
   
 
 0.731
hemF
Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
   
    0.531
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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