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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42310.1Pfam:pfam08291 Peptidase M15. (400 aa)    
Predicted Functional Partners:
AMS43779.1
Hypothetical protein.
  
     0.641
AMS44357.1
Transporter.
  
     0.617
AMS44125.1
Hypothetical protein; Pfam:pfam13692 Glycosyl transferases group 1.
  
     0.607
AMS44098.1
Hypothetical protein.
  
     0.600
AMS41291.1
Membrane protein; Pfam:pfam10095 Uncharacterized protein conserved in bacteria (DUF2333).
 
     0.589
AMS40720.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
     0.563
AMS41768.1
Pfam:pfam13502 AsmA-like C-terminal region.
  
     0.561
AMS42977.1
Amidase; Pfam:pfam01471 Putative peptidoglycan binding domain.
 
     0.555
AMS41818.1
Endonuclease.
  
     0.547
AMS43608.1
Hypothetical protein; Pfam:pfam01471 Putative peptidoglycan binding domain.
 
     0.546
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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