Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS42338.1Helix-turn-helix domain-containing protein; Pfam:pfam12844 Helix-turn-helix domain. (126 aa)    
Predicted Functional Partners:
AMS41942.1
Pfam:pfam07796 Protein of unknown function (DUF1638).
  
     0.611
AMS41938.1
Hypothetical protein; Pfam:pfam13769 Virulence factor.
  
     0.589
AMS43103.1
Pfam:pfam06253 Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.
  
     0.525
AMS41945.1
Pfam:pfam06253 Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.
  
     0.513
AMS42814.1
Cation-binding protein; Pfam:pfam01814 Hemerythrin HHE cation binding domain.
  
     0.502
AMS42340.1
HupC; Pfam:pfam00033 Cytochrome b(N-terminal)/b6/petB.
       0.473
AMS42339.1
Pfam:pfam00174 Oxidoreductase molybdopterin binding domain.
       0.470
AMS40371.1
Zn-dependent hydrolase; Pfam:pfam13483 Beta-lactamase superfamily domain.
  
     0.466
metH_2
Methyltetrahydrofolate:corrinoid methyltransferase; Pfam:pfam00809 Pterin binding enzyme.
 
    0.454
AMS41965.1
Methyltransferase; Pfam:pfam06253 Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.
  
     0.435
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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