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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42350.1Hypothetical protein; Pfam:pfam00891 O-methyltransferase. (336 aa)    
Predicted Functional Partners:
AMS43725.1
Pfam:pfam12697 Alpha/beta hydrolase family.
 
   
 0.555
AMS42348.1
Putative sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
       0.505
AMS42349.1
Pfam:pfam03795 YCII-related domain.
       0.505
AMS44253.1
Pfam:pfam00487 Fatty acid desaturase.
  
     0.474
AMS39047.1
Pfam:pfam00067 Cytochrome P450.
 
 
 
 0.467
AMS42351.1
Hypothetical protein.
       0.437
AMS39934.1
Hypothetical protein; Pfam:pfam12697 Alpha/beta hydrolase family.
 
   
 0.436
AMS39978.1
EcaC; Pfam:pfam14534 Domain of unknown function (DUF4440).
  
     0.431
AMS42347.1
Hypothetical protein.
 
     0.427
AMS39563.1
Hypothetical protein; Pfam:pfam00067 Cytochrome P450.
 
 
 0.418
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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