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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42377.1Pfam:pfam13505 Outer membrane protein beta-barrel domain. (437 aa)    
Predicted Functional Partners:
AMS39425.1
Hypothetical protein.
 
  
 0.774
AMS42793.1
Kinesin.
  
     0.765
AMS41250.1
Hypothetical protein.
  
     0.720
AMS41819.1
Hypothetical protein.
  
     0.714
AMS41596.1
Hypothetical protein; Pfam:pfam06059 Domain of Unknown Function (DUF930).
  
     0.706
AMS42407.1
Hypothetical protein.
  
     0.703
AMS40787.1
Serine kinase.
  
     0.700
AMS43414.1
Pfam:pfam13505 Outer membrane protein beta-barrel domain.
  
     0.694
AMS41877.1
Pfam:pfam00535 Glycosyl transferase family 2.
  
     0.690
AMS39649.1
Hypothetical protein; Pfam:pfam07478 D-ala D-ala ligase C-terminus.
  
     0.685
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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