Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS42386.1Cell wall hydrolase; Pfam:pfam01520 N-acetylmuramoyl-L-alanine amidase. (421 aa)    
Predicted Functional Partners:
AMS40243.1
Membrane protein; Pfam:pfam01551 Peptidase family M23.
 
 
 0.908
AMS42387.1
Penicillin-binding protein 1A; Pfam:pfam00912 Transglycosylase.
 
   
 0.741
AMS39960.1
Membrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.657
AMS43274.1
Pfam:pfam12532 Protein of unknown function (DUF3732).
  
 
 0.589
AMS40692.1
Hypothetical protein; Pfam:pfam01694 Rhomboid family.
   
   0.567
AMS42215.1
Pfam:pfam01694 Rhomboid family.
   
   0.567
AMS39103.1
Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain.
    
 0.544
AMS41742.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
    0.536
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
 
   
 0.519
AMS41125.1
Penicillin-binding protein; Pfam:pfam00912 Transglycosylase.
 
   
 0.476
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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