STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42396.1Diguanylate cyclase; Pfam:pfam00990 GGDEF domain. (246 aa)    
Predicted Functional Partners:
AMS44156.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
 0.884
AMS41465.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
  
 0.827
AMS43733.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
0.565
AMS38957.1
Diguanylate phosphodiesterase; Pfam:pfam00563 EAL domain.
 
0.552
AMS41010.1
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 0.512
AMS39479.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
 
0.503
AMS39775.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); Pfam:pfam00563 EAL domain.
 
 
0.493
AMS41037.1
Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.488
AMS39305.1
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase; Pfam:pfam00563 EAL domain.
 
 
0.482
AMS40760.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.477
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.