STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42495.1Nuclease; Pfam:pfam13482 RNase_H superfamily. (1083 aa)    
Predicted Functional Partners:
AMS40160.1
Putative DNA methylase.
  
    0.802
AMS42468.1
Hypothetical protein.
  
    0.798
AMS39352.1
Hypothetical protein.
  
    0.736
AMS42497.1
Hypothetical protein.
       0.724
AMS42467.1
Peptidase; Pfam:pfam13337 Putative ATP-dependent Lon protease.
  
    0.690
AMS42496.1
Hypothetical protein.
       0.661
AMS41078.1
5-deoxyglucuronate isomerase; Pfam:pfam04962 KduI/IolB family.
   
    0.656
AMS39669.1
Pfam:pfam01757 Acyltransferase family.
 
    0.561
AMS41485.1
AMP-dependent synthetase and ligase; Pfam:pfam00501 AMP-binding enzyme.
 
    0.558
AMS39315.1
Pfam:pfam01757 Acyltransferase family.
  
    0.486
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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