STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42516.1Putative exported peptidase; Pfam:pfam00656 Caspase domain. (934 aa)    
Predicted Functional Partners:
AMS42517.1
Hypothetical protein.
       0.737
AMS42539.1
Type VI secretion protein; Pfam:pfam00498 FHA domain.
 
   
 0.609
AMS41033.1
Pfam:pfam06429 Flagellar basal body rod FlgEFG protein C-terminal; Belongs to the flagella basal body rod proteins family.
   
 
 0.580
AMS42541.1
Type VI secretion protein; Pfam:pfam14331 ImcF-related N-terminal domain.
 
     0.538
AMS41293.1
ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
 
 
 0.536
AMS42540.1
Type IV / vi secretion system protein, dotu family; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.526
AMS42529.1
Membrane protein; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.519
AMS44236.1
Hypothetical protein; Pfam:pfam01471 Putative peptidoglycan binding domain.
 
   
 0.500
AMS39956.1
Hypothetical protein; Pfam:pfam03567 Sulfotransferase family.
  
 
 0.490
AMS42520.1
Type VI secretion protein; Pfam:pfam05591 Protein of unknown function (DUF770).
 
   
 0.479
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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