STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42527.1Pfam:pfam12790 Type VI secretion lipoprotein. (150 aa)    
Predicted Functional Partners:
AMS42529.1
Membrane protein; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.990
AMS42524.1
Type VI secretion protein; Pfam:pfam05947 Bacterial protein of unknown function (DUF879).
 
  
 0.978
AMS42523.1
Type VI secretion protein; Pfam:pfam04965 Gene 25-like lysozyme.
 
  
 0.977
AMS42525.1
Type VI secretion protein; Pfam:pfam06996 Protein of unknown function (DUF1305).
 
  
 0.975
AMS42540.1
Type IV / vi secretion system protein, dotu family; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.967
AMS42520.1
Type VI secretion protein; Pfam:pfam05591 Protein of unknown function (DUF770).
 
  
 0.964
AMS42528.1
Type VI secretion protein; Pfam:pfam05936 Bacterial protein of unknown function (DUF876).
 
  
 0.963
AMS42526.1
Type VI secretion protein; Pfam:pfam00498 FHA domain.
 
  
 0.961
AMS42521.1
Type VI secretion protein, evpb/vc_a0108 family; Pfam:pfam05943 Protein of unknown function (DUF877).
 
  
 0.949
AMS42531.1
Type VI secretion protein; Pfam:pfam09867 Uncharacterized protein conserved in bacteria (DUF2094).
 
  
 0.943
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.