STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42528.1Type VI secretion protein; Pfam:pfam05936 Bacterial protein of unknown function (DUF876). (444 aa)    
Predicted Functional Partners:
AMS42529.1
Membrane protein; Pfam:pfam09850 Uncharacterized protein conserved in bacteria (DUF2077).
 
  
 0.988
AMS42520.1
Type VI secretion protein; Pfam:pfam05591 Protein of unknown function (DUF770).
 
  
 0.981
AMS42531.1
Type VI secretion protein; Pfam:pfam09867 Uncharacterized protein conserved in bacteria (DUF2094).
 
  
 0.971
AMS42530.1
Type VI secretion protein VasK; Pfam:pfam14331 ImcF-related N-terminal domain.
 
  
 0.968
AMS42527.1
Pfam:pfam12790 Type VI secretion lipoprotein.
 
  
 0.964
AMS42523.1
Type VI secretion protein; Pfam:pfam04965 Gene 25-like lysozyme.
 
  
 0.963
AMS42524.1
Type VI secretion protein; Pfam:pfam05947 Bacterial protein of unknown function (DUF879).
 
  
 0.959
AMS42532.1
Pfam:pfam09937 Uncharacterized protein conserved in bacteria (DUF2169).
 
    0.956
AMS42525.1
Type VI secretion protein; Pfam:pfam06996 Protein of unknown function (DUF1305).
 
  
 0.953
AMS42534.1
Hypothetical protein; Pfam:pfam13665 Domain of unknown function (DUF4150).
 
    0.953
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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