Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMS42584.1Pfam:pfam07045 Protein of unknown function (DUF1330). (94 aa)    
Predicted Functional Partners:
AMS39717.1
Pfam:pfam07045 Protein of unknown function (DUF1330).
  
     0.735
AMS39664.1
Pfam:pfam07045 Protein of unknown function (DUF1330).
  
     0.733
AMS42579.1
Hypothetical protein; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
       0.631
AMS42580.1
Putative Short-chain dehydrogenase/reductase family protein; Pfam:pfam00106 short chain dehydrogenase.
       0.631
AMS42581.1
Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.631
AMS42582.1
Putative branched-chain amino acid transport system ATP-binding protein; Pfam:pfam00005 ABC transporter.
       0.631
AMS42583.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
       0.631
AMS42585.1
Hypothetical protein; Pfam:pfam13458 Periplasmic binding protein.
       0.594
AMS43502.1
Anti-sigma factor.
  
     0.420
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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