STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42919.1Peptide ABC transporter substrate-binding protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle. (530 aa)    
Predicted Functional Partners:
AMS42917.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
  0.990
AMS42916.1
Cytochrome C550; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.906
AMS42914.1
Putative ATP-binding component of ABC transporter; Pfam:pfam00005 ABC transporter.
 
  
 0.872
AMS42915.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
    0.839
AMS42918.1
Hypothetical protein; Pfam:pfam07883 Cupin domain.
 
   
 0.828
AMS39854.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
   0.827
AMS39853.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.820
AMS42913.1
Hypothetical protein.
 
     0.795
AMS39851.1
Pfam:pfam00005 ABC transporter.
 
  
 0.711
AMS42920.1
Hypothetical protein; Pfam:pfam00557 Metallopeptidase family M24; Belongs to the peptidase M24B family.
 
     0.700
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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