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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS42944.1Hypothetical protein; Pfam:pfam13480 Acetyltransferase (GNAT) domain. (403 aa)    
Predicted Functional Partners:
AMS42943.1
Hypothetical protein; Pfam:pfam01522 Polysaccharide deacetylase.
 
     0.892
AMS42945.1
Exopolysaccharide transporter; Pfam:pfam02706 Chain length determinant protein.
 
   
 0.811
AMS42949.1
Membrane protein.
 
   
 0.789
AMS40710.1
Multi antimicrobial extrusion protein MatE; Pfam:pfam13440 Polysaccharide biosynthesis protein.
 
    0.786
AMS42947.1
Transferase; Pfam:pfam00534 Glycosyl transferases group 1.
 
     0.765
AMS42792.1
Hypothetical protein.
  
   
 0.762
AMS42213.1
Pilus assembly protein PilZ; Pfam:pfam07238 PilZ domain.
  
     0.747
AMS40953.1
Pfam:pfam10082 Uncharacterized protein conserved in bacteria (DUF2320).
 
     0.743
AMS42210.1
Hypothetical protein.
  
     0.731
AMS44402.1
Pfam:pfam01478 Type IV leader peptidase family.
  
     0.714
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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