| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMS42954.1 | rplB | AA2016_4037 | AA2016_3507 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.791 |
| AMS42954.1 | rplF | AA2016_4037 | AA2016_3519 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.797 |
| AMS42954.1 | rplK | AA2016_4037 | AA2016_3490 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.813 |
| AMS42954.1 | rplM | AA2016_4037 | AA2016_4017 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.798 |
| AMS42954.1 | rplT | AA2016_4037 | AA2016_0743 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.793 |
| AMS42954.1 | rpmC | AA2016_4037 | AA2016_3512 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | Pfam:pfam00831 Ribosomal L29 protein; Belongs to the universal ribosomal protein uL29 family. | 0.806 |
| AMS42954.1 | rpmE | AA2016_4037 | AA2016_1430 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.792 |
| AMS42954.1 | rpsE | AA2016_4037 | AA2016_3521 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.805 |
| AMS42954.1 | rpsI | AA2016_4037 | AA2016_4018 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | Pfam:pfam00380 Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.803 |
| AMS42954.1 | rpsL | AA2016_4037 | AA2016_3499 | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.803 |
| rplB | AMS42954.1 | AA2016_3507 | AA2016_4037 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase; Pfam:pfam13328 HD domain. | 0.791 |
| rplB | rplF | AA2016_3507 | AA2016_3519 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
| rplB | rplK | AA2016_3507 | AA2016_3490 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.997 |
| rplB | rplM | AA2016_3507 | AA2016_4017 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
| rplB | rplT | AA2016_3507 | AA2016_0743 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.993 |
| rplB | rpmC | AA2016_3507 | AA2016_3512 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Pfam:pfam00831 Ribosomal L29 protein; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
| rplB | rpmE | AA2016_3507 | AA2016_1430 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.924 |
| rplB | rpsE | AA2016_3507 | AA2016_3521 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
| rplB | rpsI | AA2016_3507 | AA2016_4018 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Pfam:pfam00380 Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
| rplB | rpsL | AA2016_3507 | AA2016_3499 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
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