STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS43008.1Vanillate O-demethylase oxidoreductase; Pfam:pfam00111 2Fe-2S iron-sulfur cluster binding domain. (330 aa)    
Predicted Functional Partners:
AMS39563.1
Hypothetical protein; Pfam:pfam00067 Cytochrome P450.
 0.906
AMS43009.1
Hypothetical protein; Pfam:pfam00355 Rieske [2Fe-2S] domain.
 
  
 0.798
AMS42320.1
Hypothetical protein; Pfam:pfam01592 NifU-like N terminal domain.
  
 0.740
AMS40107.1
Hydrogenase; Pfam:pfam00355 Rieske [2Fe-2S] domain.
 
  
 0.697
AMS40128.1
Hydrogenase; Pfam:pfam00355 Rieske [2Fe-2S] domain.
 
  
 0.688
AMS42862.1
Cysteine desulfarase; Pfam:pfam00266 Aminotransferase class-V.
  
 0.652
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.552
AMS40610.1
Oxidoreductase; Pfam:pfam00111 2Fe-2S iron-sulfur cluster binding domain.
  
  
 0.542
AMS43007.1
Pfam:pfam00962 Adenosine/AMP deaminase.
     
 0.541
AMS39257.1
Hypothetical protein; Pfam:pfam00175 Oxidoreductase NAD-binding domain.
 
  
 0.534
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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