Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS43019.1Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain. (278 aa)    
Predicted Functional Partners:
AMS43000.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
 
 
 0.785
AMS40808.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
 
 
 0.722
AMS39818.1
Hypothetical protein; Pfam:pfam13278 Putative amidotransferase.
 
 
 0.640
AMS43218.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
 
 
 0.572
AMS43018.1
Glycine cleavage system T protein (Aminomethyltransferase); Pfam:pfam01571 Aminomethyltransferase folate-binding domain; Belongs to the GcvT family.
       0.520
AMS43011.1
AraC family transcriptional regulator; Pfam:pfam13278 Putative amidotransferase.
 
 
0.513
AMS41302.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.483
AMS42845.1
AraC family transcriptional regulator; Pfam:pfam06445 GyrI-like small molecule binding domain.
 
     0.465
AMS43020.1
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
     
 0.422
AMS43017.1
Lipoprotein; Pfam:pfam02608 Basic membrane protein.
       0.401
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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