STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43063.1Membrane protein; Pfam:pfam09928 Predicted small integral membrane protein (DUF2160). (93 aa)    
Predicted Functional Partners:
AMS43062.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
    0.960
AMS43060.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
    0.959
AMS43061.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
    0.959
AMS43059.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
    0.957
AMS43064.1
ABC-type sugar transport system, periplasmic component.
 
    0.930
AMS43058.1
Glycerol-3-phosphate dehydrogenase; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
     0.740
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
    0.532
AMS42633.1
DeoR family transcriptional regulator; Pfam:pfam00455 DeoR C terminal sensor domain.
 
     0.474
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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