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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43081.1Pfam:pfam00005 ABC transporter. (294 aa)    
Predicted Functional Partners:
AMS43082.1
Zinc ABC transporter permease; Pfam:pfam00950 ABC 3 transport family.
 
 
 0.987
AMS43083.1
Metal ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.979
AMS39248.1
Membrane protein; Pfam:pfam00950 ABC 3 transport family.
 
 
 0.931
AMS39245.1
Iron ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.918
AMS39247.1
Membrane protein; Pfam:pfam00950 ABC 3 transport family.
 
 
 0.915
AMS43080.1
Pfam:pfam01042 Endoribonuclease L-PSP.
       0.504
AMS43084.1
Hypothetical protein.
  
  
 0.498
AMS39233.1
Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family.
  
  
 0.475
fur_2
Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family.
  
  
 0.451
fur
Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family.
  
  
 0.441
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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