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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43135.1Patatin; Pfam:pfam01734 Patatin-like phospholipase. (483 aa)    
Predicted Functional Partners:
AMS39821.1
Adhesin; Pfam:pfam03797 Autotransporter beta-domain.
  
     0.629
AMS43136.1
Ethyl tert-butyl ether degradation protein EthD.
       0.570
AMS41439.1
Hypothetical protein; Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.541
AMS41441.1
Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.498
AMS42065.1
Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.466
AMS41440.1
Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.456
AMS43951.1
Short-chain dehydrogenase; Pfam:pfam05940 NnrS protein.
  
     0.441
AMS41250.1
Hypothetical protein.
 
     0.437
AMS44123.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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