STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43247.1Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain. (149 aa)    
Predicted Functional Partners:
AMS39949.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.725
AMS41302.1
Hypothetical protein; Pfam:pfam12833 Helix-turn-helix domain.
  
     0.704
AMS43245.1
RND multidrug efflux transporter MexF; Pfam:pfam00873 AcrB/AcrD/AcrF family.
   
 
 0.468
AMS43246.1
Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.445
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.