STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaV_3Transcriptional regulator of ars operon; Pfam:pfam12840 Helix-turn-helix domain. (105 aa)    
Predicted Functional Partners:
AMS43316.1
Arsenite efflux pump ACR3; Pfam:pfam01758 Sodium Bile acid symporter family.
 
  
 0.706
AMS43318.1
NADPH:quinone oxidoreductase-like; Pfam:pfam03358 NADPH-dependent FMN reductase.
 
   
 0.684
AMS43320.1
Pfam:pfam07690 Major Facilitator Superfamily.
       0.646
AMS43317.1
Arsenate reductase; Pfam:pfam03960 ArsC family.
     
 0.629
AMS43315.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
 
    
0.583
AMS40638.1
Hypothetical protein; Pfam:pfam01451 Low molecular weight phosphotyrosine protein phosphatase.
 
  
 0.509
AMS43314.1
Hypothetical protein.
       0.401
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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