Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS43331.1Hypothetical protein; Pfam:pfam05974 Domain of unknown function (DUF892). (166 aa)    
Predicted Functional Partners:
AMS43333.1
Putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain; Pfam:pfam00106 short chain dehydrogenase.
 
    0.837
AMS43332.1
Hypothetical protein.
       0.773
AMS43322.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
  
 0.726
AMS42506.1
Pfam:pfam13298 DNA polymerase Ligase (LigD).
 
    0.627
AMS43334.1
Hypothetical protein.
       0.603
AMS41753.1
Hypothetical protein; Pfam:pfam04120 Low affinity iron permease.
 
    0.577
AMS43330.1
Hypothetical protein.
       0.543
ku
ATP-dependent DNA ligase; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.478
AMS41138.1
Hypothetical protein; Pfam:pfam01068 ATP dependent DNA ligase domain.
 
    0.466
AMS40001.1
Pfam:pfam01028 Eukaryotic DNA topoisomerase I, catalytic core.
 
     0.443
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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