STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43344.1Two component response regulator; Pfam:pfam03861 ANTAR domain. (216 aa)    
Predicted Functional Partners:
AMS43345.1
Amino acid ABC transporter substrate-binding protein; Pfam:pfam13433 Periplasmic binding protein domain.
 
 
 0.948
AMS43353.1
N-acetylmuramoyl-L-alanine amidase AmiC; Pfam:pfam13433 Periplasmic binding protein domain.
 
 
 0.871
AMS39396.1
Hypothetical protein; Pfam:pfam13458 Periplasmic binding protein.
  
 
 0.725
AMS43354.1
Transcriptional antiterminator; Pfam:pfam03861 ANTAR domain.
  
     0.631
AMS42035.1
Pfam:pfam02293 AmiS/UreI family transporter.
 
  
 0.620
AMS42036.1
FmdB family regulatory protein; Pfam:pfam09723 Zinc ribbon domain.
  
     0.515
AMS43907.1
Amino acid ABC transporter substrate-binding protein; Pfam:pfam01094 Receptor family ligand binding region.
 
   0.455
AMS39614.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.446
AMS44116.1
Hypothetical protein; Pfam:pfam09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme.
  
     0.421
AMS39955.1
Ammonia channel protein; Pfam:pfam00909 Ammonium Transporter Family.
  
  
 0.417
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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