STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43345.1Amino acid ABC transporter substrate-binding protein; Pfam:pfam13433 Periplasmic binding protein domain. (385 aa)    
Predicted Functional Partners:
AMS43344.1
Two component response regulator; Pfam:pfam03861 ANTAR domain.
 
 
 0.948
AMS43353.1
N-acetylmuramoyl-L-alanine amidase AmiC; Pfam:pfam13433 Periplasmic binding protein domain.
  
  
 
0.922
AMS42581.1
Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.814
AMS43354.1
Transcriptional antiterminator; Pfam:pfam03861 ANTAR domain.
 
 
 0.793
AMS42605.1
Hypothetical protein; Pfam:pfam00005 ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.787
AMS42890.1
ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.731
AMS42889.1
ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.691
AMS39397.1
Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.652
AMS39398.1
Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.642
ureB
Pfam:pfam00699 Urease beta subunit; Belongs to the urease beta subunit family.
 
   
 0.575
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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