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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43349.1Putative endonuclease containing a URI domain; Pfam:pfam01541 GIY-YIG catalytic domain. (89 aa)    
Predicted Functional Partners:
rsmI
16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.427
AMS44058.1
Pfam:pfam04480 Protein of unknown function (DUF559).
  
     0.426
AMS43480.1
Pfam:pfam04480 Protein of unknown function (DUF559).
  
     0.412
AMS41442.1
Methyltransferase, FkbM family; Pfam:pfam05050 Methyltransferase FkbM domain.
  
  
 0.404
AMS43789.1
Hypothetical protein; Pfam:pfam09413 Domain of unknown function (DUF2007).
  
  
 0.404
AMS43790.1
Hypothetical protein; Pfam:pfam05175 Methyltransferase small domain; Belongs to the methyltransferase superfamily.
  
  
 0.404
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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