STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS43352.1Amino acid transporter; Pfam:pfam01810 LysE type translocator. (210 aa)    
Predicted Functional Partners:
AMS43353.1
N-acetylmuramoyl-L-alanine amidase AmiC; Pfam:pfam13433 Periplasmic binding protein domain.
   
   0.485
AMS43354.1
Transcriptional antiterminator; Pfam:pfam03861 ANTAR domain.
       0.451
AMS43355.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.451
AMS43356.1
Glutathione ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.451
AMS43351.1
Pfam:pfam00072 Response regulator receiver domain.
  
    0.447
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.